Publications

/Publications
Publications2017-12-14T11:43:27+00:00

Current

Cottier-Cook, E.J., Nagabhatla, N., Badis, Y., Campbell, M., Chopin, T, Dai, W, Fang, J., He, P, Hewitt, C, Kim, G. H., Huo, Y, Jiang, Z, Kema, G, Li, X, Liu, F, Liu, H, Liu, Y, Lu, Q, Luo, Q, Mao, Y, Msuya, F. E, Rebours, C, Shen, H., Stentiford, G. D., Yarish, C, Wu, H, Yang, X, Zhang, J, Zhou, Y, Gachon, C. M. M. (2016). Safeguarding the future of the global seaweed aquaculture industry.  United Nations University (INWEH) and Scottish Association for Marine Science Policy Brief. ISBN 978-92-808-6080-1. 12pp

Background

Bass D, Stentiford GD, Littlewood T, Hartikainen H. (2015). Diverse applications of environmental DNA methods in parasitology. Trends in Parasitology 31, 499-513

Beltran-Gutierrez M., S.C.A. Ferse, A. Kunzmann, S. Stead, F. Msuya, T. Hoffmeister & M. Slater 2014. Co-culture of sea cucumber Holothuria scabra and red seaweed Kappaphycus striatum. Aquaculture Research, (2014)1–11.

Borlongan IAG, Luhan Ma. RJ, Padilla PIP and Hurtado AQ. 2016. Photosynthetic responses of ‘Neosiphonia sp. epiphyte-infected’ and healthy Kappaphycus alvarezii (Rhodophyta) to irradiance, salinity and pH variations. Journal of Applied Phycology. DOI: 10.1007/s10811016-0833-4

Brodie, J., Wilbraham, J., Pottas, J. & Guiry, M.D.  (2016). A revised check-list of the seaweeds of Britain. Journal of the Marine Biological Association 96 (5): 1005-1029. doi:10.1017/S0025315415001484

Brodie, J., Williamson, C., G.L. Barker, Walker, R.H., Briscoe, A. & Yallop, M. (2016). Characterising the microbiome of Corallina officinalis, a dominant calcified intertidal red alga. FEMS Microbiology Ecology, 92 (8): fiw110 – fiw110. doi: 10.1093/femsec/fiw

Chan SW, Cheang CC, Chirapart A, Gerung Grevo, Tharith C, P. Ang. (2014) Homogeneous  Population of the Brown Alga Sargassum polycystum in Southeast Asia: Possible Role of Recent Expansion and Asexual Propagation.PLoS ONE 8(10): e77662. doi:10.1371/journal.pone.0077662

Chan, SW, Cheung CC, Chirapart A, Gerung Grevo, Ang P. (2014). Recent expansion to the lack of genetic structure of Sargassum aquifolium populations in Southeast Asia. Marine Biology. Volume 161, Issue 4, pp 785-795

Cottier-Cook, E.J., Beveridge, C, Bishop, J, Brodie, J, Clark, P., Epstein, G, Jenkins, S. Johns, D., Loxton, J., Macleod, A., Maggs, C, Minchin, D., Mineur, F., Sewell, J and Wood, C (2017).  Non-native species – A decadal review IN Marine Climate Change Impacts Partnership Report Card. http://www.mccip.org.uk/media/1765/2017arc_sciencereview_005_nns.pdf

Cook, E.J., Payne, R.D., MacLeod, A, Brown, S.F. (2016). Marine Biosecurity: protecting indigenous marine species. Research and Reports in Biodiversity Studies 5:1-14. doi:10.2147/RRBS.S63402

Cook, E.J., Beveridge, C., Twigg, G., Macleod, A. (2015).  Assessing the Effectiveness of Early Warning Systems for the Detection of Marine Invasive Non-Native Species in Scottish Waters.  SAMS, Scottish Natural Heritage & Marine Scotland Science Commissioned Report No. 874. http://www.snh.org.uk/pdfs/publications/commissioned_reports/874.pdf

Galil, B.S., Boero, F., Campbell, M.L., Carlton, J.T., Cook, E.J., Fraschetti, S., Gollasch, S., Hewitt, C.L., Jelmert, A., Macpherson, E., Marchini, A., McKenzie, C., Minchin, D., OcchipintiAmbrogi, A., Ojaveer, H., Olenin, S., Piraino, S., Ruiz, G.M. (2015). ‘Double trouble’: the expansion of the Suez Canal and marine bioinvasions in the Mediterranean Sea. Biological Invasions 17:973-976. DOI 10.1007/s10530-014-0778-y

Guillemin, M.-L., Contreras-Porcia, L., Ramirez M.-E., Macaya, E., Flores-Molina, M.R., Contador, C.B., Woods, H., Wyatt, C. & Brodie, J.  (2016). The bladed Bangiales (Rhodophyta) of the South Eastern Pacific: a molecular species delimitation reveals extensive diversity. Molecular Phylogenetics and Evolution 94: 814–826. DOI: 10.1016/j.ympev.2015.09.027

Hartikainen H, Stentiford GD, Bateman KS, Berney C, Feist SW, Longshaw M, Okamura B, Stone D, Ward G, Wood G, Bass D. (2014). Mikrocytids: a novel radiation of parasitic protists with a broad invertebrate host range and distribution. Current Biology 24, 807-812

Hurtado AQ, Gerung GS, Yasir S. and Critchley AT. 2014. Cultivation of tropical red seaweeds in the BIMP-EAGA region. Journal of Applied Phycology 26:702-718

Hurtado AQ, Neish IC, Critchley AT. 2015.  Developments in production technology of Kappaphycus in the Philippines: More than four decades of farming. Journal of Applied Phycology 27:1945-1961

Iris Ann Borlongan , Grevo S. Gerung, Shigeo Kawaguchi, Gregory N. Nishihara and Ryuta Terada. Thermal and PAR effects on the photosynthesis of Eucheuma denticulatum and Kappaphycus striatus (so-called Sacol strain) cultivated in shallow bottom of Bali, Indonesia (2016).  J Appl Phycol DOI 10.1007/s10811-016-0956-7

Lang T, Feist SW, Stentiford GD, Bignell JP, Vethaak D. (2015). Diseases of dab (Limanda limanda): analysis and assessment of data on externally visible diseases, macroscopic liver neoplasms and liver histopathology in the North Sea, Baltic Sea and off Iceland. Marine Environmental Research. doi:10.1016/j.marenvres.2015.12.009

Lim PE, Tan J, Phang SM, Nikmatullah A, Hong DD, Sunarpi H, and Hurtado AQ. 2014. Genetic diversity of Kappaphycus and Eucheuma J. Agardh (Solieriraceae, Rhodophyta) in Southeast Asia. J Phycol Appl 26:153-1272

Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM, Coelho SM (2015) Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga Ectocarpus. Molecular Biology & Evolution 32: 1581-1597.

Loureiro R, Gachon CMM, Rebours C. (2015) Promises and challenges of seaweed domestication at an unprecedented pace. New Phytologist doi: 10.1111/nph.13278.

Msuya F.E. and Porter M. 2014. Impact of Environmental Changes on Farmed Seaweed and Farmers: The case of Songosongo Island, Tanzania. Journal of Applied Phycology, 26:2135-2141.

Msuya F.E., Buriyo A., Omar I, Pascal B., Narrain K., Ravina J.J.M., Mrabu E., Wakibia J.G. 2014. Cultivation and utilisation of red seaweeds in the Western Indian Ocean (WIO) Region. Journal of Applied Phycology, 26:699-705.

Nagabhatla, N., Padmanabhan, M., Kühle, P.,Vishnudas, S., Betz, L. and Niemeyer, B. 2015. LCLUC as an entry point for  transdisciplinary research –reflections from an agriculture land use change study in South Asia. Journal of Environmental Management. Jan 15;148:42-52.

Nagabhatla N, Sahu S.K, Gaetaniello G, Wen L and Lee W. 2015. Understanding impacts of climate variation in varied socio-ecological domains: A pre-requisite for climate change adaptation and management. In: Handbook of Climate Change Adaptation. Springer Publications. ISBN: 978-3-642-40455-9. pp 1-25.

Namukose M., Msuya F.E., Ferse S.C. A., Slater M.J. and Kunzmann A. 2016.  Growth performance of the sea cucumber Holothuria scabra and the seaweed Eucheuma denticulatum: integrated mariculture and effects on sediment organic characteristics. Aquaculture Environment Interactions, 8: 179–189.

Ojaveer, H., Galil, B.S., Campbell, M.L., Carlton, J.T., Canning-Clode, J., Cook, E.J., et al. (2015). Classification of Non-Indigenous Species Based on Their Impacts: Considerations for Application in Marine Management. PLoS Biol 13(4): e1002130. doi:10.1371/journal.pbio.1002130.

Pasanen T & L Shaxson (2016) How to design a monitoring and evaluation framework for a policy research project.  A Methods Lab publication.  London: Overseas Development Institute

Perkins, R.G., Williamson, C.J., Brodie, J., Barillé, L., Launeau, P., Lavaud, J., Yallop, M.L. and Jesus, B.  (2016). Microspatial variability in community structure and photophysiology of calcified macroalgal microbiomes revealed by the coupling of hyperspectral and high-resolution fluorescence imaging. Scientific Reports 6: 22343; doi: 10.1038/srep22343.

Plieninger, T., Bieling, C., Fagerholm, N., Byg, A., Hartel, T., Hurley, P., López-Santiago, C. A., Nagabhatla, N., OterosRozas, E., Raymond, C. M., van der Horst, D. and Huntsinger, L. 2015: The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability 14: 28-33.

Roy, H.E., Peyton, J., Aldridge, D.C., Bantock, T., Blackburn, T.M., Bishop, J., Britton, R., Clark, P., Cook, E.J., Dehnen-Schmutz, K., Dines, T., Dobson, M., Edwards, F., Harrower, C., Harvey, M.C., Minchin, D., Noble, D.G., Parrott, D.,  Pocock, M.J.O., Preston, C.D., Roy, S., Salisbury, A., Schönrogge, K., Sewell, J., Shaw, R.H., Stebbing, P., Stewart, A.J.A., Walker, K.J. (2014). Horizon-scanning for invasive alien species with the potential to threaten biodiversity in Great Britain. Global Change Biology: 20(12) 3859–3871 http://onlinelibrary.wiley.com/doi/10.1111/gcb.12603/pdf

Roy HE, Hesketh H, Purse BV, Eilenberg J, Santini A, Scalera R, Stentiford GD, Adriaens T, Amtoft Wynns A, Bacela-Spychalska K, Bass D, et al. (2016). Alien pathogens on the Horizon: opportunities for predicting their threat to wildlife. Conservation Letters doi: 10.1111/conl.12297

Shaxson, L (2014)  Investing in evidence: lessons from the UK’s Department for Environment, Food and Rural Affairs.  Working Paper 2, Indonesia Knowledge Sector Initiative.

Shaxson L, A Datta, M Tshangela & B Matomela (2016) Understanding the organisational context for evidence-informed policymaking.  Pretoria: Department for Environmental Affairs and London: ODI

Shaxson L (2016)  Lessons for building and managing an evidence base for policy.  Knowledge Sector Initiative Working Paper.  Jakarta: Knowledge Sector Initiative.

Shaxson L & J Tsui (2016) Synthesising and presenting complex evidence for policy: experience with annual report cards.  Knowledge Sector Initiative Working Paper.  Jakarta: Knowledge Sector Initiative.

Siew-Moi Phang, Hui-Yin Yeong, Edna T. Ganzon-Fortes, Khanjanapaj Lewmanomont, Anchana Prathep, Le Nhu Hau, Grevo S. Gerung & Koh Siang Tan. (2016), Marine algae of the South China Sea bordered by Indonesia, Malaysia, Philippines, Singapore, Thailand and Vietnam. Raffles Bulletin of Zoology, Supplement No. 34: 13–59

Stentiford GD, Feist SW, Stone DM, Peeler EJ, Bass D. (2014). Politics, phylogeny and the parasite. Trends in Parasitology 30, 274-281.

Stentiford GD, Becnel J, Weiss L, Keeling P, et al. (2015). Microsporidia – Emergent pathogens in the global food chain. Trends in Parasitology 32, 336–348

Stentiford GD, Kerr R, Bateman KS, Feist SW, Bass D, et al. (2015). Hyperspora aquatica n.gen., n. sp. (Microsporidia), hyperparasitic in Marteilia cochillia (Paramyxida), is closely related to crustacean-infecting microsproridian taxa. Parasitology doi:10.1017/S0031182016001633

Strittmatter M, Grenville-Briggs L, Breithut L, van West P, Gachon CMM, Küpper FC. (2016) Infection of the brown alga Ectocarpus siliculosus by the oomycete Eurychasma dicksonii induces oxidative stress and halogen metabolism. Plant Cell & Environment 39: 259–271.

Strittmatter M, Guerra T, Silva J, Gachon CMM (2015). A new flagellated dispersion stage in Paraphysoderma sedebokerense, a pathogen of Haematococcus pluvialis. Journal of Applied Phycology doi:10.1007/s10811-015-0700-8.

Tan J, Lim PE, Phang SM, Rahiman A, Nikmatullah A, Sunarpi H, and Hurtado AQ. 2014. Kappaphycus malesianus sp. nov.: a new species of Kappaphycus (Gigartinales, Rhodophyta) from Southeast Asia. Journal of Applied Phycology 
 26:1273-1285

Tibubos K, Hurtado AQ and Chritchley AT. 2016. Direct formation of axes in new plantlets of Kappaphycus alvarezii (Doty) Doty, as influenced by the use of AMPEP K+, spindle inhibitors and plant growth hormones. Journal of Applied Phycology, DOI:10.1007/s10811-0160988-z

Tsirigoti A, Beakes GW, Hervé C, Gachon CMM, Katsaros C. (2014) Attachment, penetration and early host defense mechanisms during the infection of filamentous brown algae by Eurychasma dicksonii. Protoplasma, doi: 10.1007/s00709-014-0721-1.

Valderrama, D., J. Cai, N. Hishamunda, N. Reidler, I.C. Neish, A.Q. Hurtado, F.E. Msuya, M. Krishnan, R. Narayanakumar, M. Kronen, D. Robledo, E. Gasca-Leyva and J. Fraga.  2015.  The economics of Kappaphycus seaweed cultivation in developing countries: a comparative analysis of farming systems.  Aquaculture Economics and Management 19:251-277.

Verbruggen B, Bickley LK, Santos EM, Tyler CR, Stentiford GD, Bateman KS, van Aerle R. (2015). Molecular mechanisms of white spot syndrome virus infection and perspectives on treatments. Viruses 8, 23. doi:10.3390/v8010023

Williamson, C.J., Walker, R.H., Robba, L., Yesson, C., Russell, S., Irvine, L.M. & Brodie J. (2015). Towards resolution of diversity in Corallina (Tribe Corallineae, Rhodophyta) and related genera. Phycologia 2015, Vol. 54, No. 1, pp. 2-11. doi: http://dx.doi.org/10.2216/14-024.1

Williamson, C., Yesson, C., Briscoe, A. & Brodie, J. (2016). Complete mitochondrial genome of the geniculate calcified red alga, Corallina officinalis (Corallinales, Rhotophyta). Mitochondria DNA Part B 1 (1) 377–378. http://dx.doi.org/10.1080/23802359.2016.1172048

Wills, A., M. Tshangela, N. Bohler-Muller, A. Datta, N. Funke, L. Godfrey, B. Matomela, G. Pienaar, N. Pophiwa, L. Shaxson, W. Strydom and Ke, Y. (2016) Evidence and policy in South Africa’s Department of Environmental Affairs. Pretoria: Department of Environmental Affairs and London: Overseas Development Institute.

Wills, A., M. Tshangela, L Shaxson, A. Datta and B. Matomela. (2016) Guidelines and good practices for evidence-informed policy- making in a government department. Pretoria: Department of Environmental Affairs; and London: Overseas Development Institute.

Yesson, C, Bush, L., Davies, A., Maggs, C.A. & Brodie, J. (2015). The distribution and environmental requirements of large brown seaweeds in the British Isles.  Journal of the Marine Biological Association 95 (4): 669-680. doi:10.1017/S0025315414001453

Yesson, C, Bush, L., Davies, A., Maggs, C.A. & Brodie, J.  (2015). Large brown seaweeds of the British Isles: evidence of changes in abundance over four decades.  Estuarine and Coastal Shelf Science 155: 167-175. doi:10.1016/j.ecss.2015.01.008